One-to-n alignments

Command: compare-matrices  -v 1 -format1 transfac -file1 $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.165628_AJR4I4/compare-matrices_query_matrices.transfac -file2 $RSAT/public_html/motif_databases/footprintDB/footprintDB.plants.motif.tf -format2 tf -strand DR -lth cor 0.7 -lth Ncor 0.4 -uth match_rank 50 -return cor,Ncor,logoDP,NsEucl,NSW,match_rank,matrix_id,matrix_name,width,strand,offset,consensus,alignments_1ton -o $RSAT/public_html/tmp/www-data/2019/07/03/compare-matrices_2019-07-03.165628_AJR4I4/compare-matrices.tab

One-to-n matrix alignment; reference matrix: dyads_test_vs_ctrl_m1_shift8 ; 152 matrices ; sort_field=rank_mean

Matrix name Aligned logos cor Ncor logoDP NsEucl NSW rcor rNcor rlogoDP rNsEucl rNSW rank_mean match_rank Aligned matrices

dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)
; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=16; shift=8; ncol=29; --------wwgaAAAGTCAAmtww----- ; Alignment reference a 0 0 0 0 0 0 0 0 144 144 95 271 393 383 401 18 24 18 313 307 127 106 153 145 0 0 0 0 0 c 0 0 0 0 0 0 0 0 84 68 40 64 21 9 8 11 15 392 39 20 183 54 81 79 0 0 0 0 0 g 0 0 0 0 0 0 0 0 84 72 220 40 8 11 6 377 7 5 29 39 54 78 88 65 0 0 0 0 0 t 0 0 0 0 0 0 0 0 119 147 76 56 9 28 16 25 385 16 50 65 67 193 109 142 0 0 0 0 0

WRKY8.DAP_M0792_AthalianaCistrome_shift9 (WRKY8.DAP:M0792:AthalianaCistrome) 0.918 0.861 7.346 0.951 0.963 20 1 5 14 20 12.000 3
; dyads_test_vs_ctrl_m1 versus WRKY8.DAP_M0792_AthalianaCistrome (WRKY8.DAP:M0792:AthalianaCistrome); m=3/151; ncol2=15; w=15; offset=1; strand=D; shift=9; score= 12; ---------raaAAAGTCAACgaw----- ; cor=0.918; Ncor=0.861; logoDP=7.346; NsEucl=0.951; NSW=0.963; rcor=20; rNcor=1; rlogoDP=5; rNsEucl=14; rNSW=20; rank_mean=12.000; match_rank=3 a 0 0 0 0 0 0 0 0 0 186 275 363 528 566 575 0 0 0 600 600 58 87 191 176 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 104 98 79 8 0 0 0 0 600 0 0 527 72 146 132 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 173 108 90 37 7 24 600 0 0 0 0 0 376 117 63 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 137 119 68 27 27 1 0 600 0 0 0 15 65 146 229 0 0 0 0 0

WRKY43.ampDAP_M0828_AthalianaCistrome_shift8 (WRKY43.ampDAP:M0828:AthalianaCistrome) 0.881 0.826 5.919 0.946 0.957 45 3 16 21 35 24.000 14
; dyads_test_vs_ctrl_m1 versus WRKY43.ampDAP_M0828_AthalianaCistrome (WRKY43.ampDAP:M0828:AthalianaCistrome); m=14/151; ncol2=15; w=15; offset=0; strand=D; shift=8; score= 24; --------waaaAAAGTCAACGm------ ; cor=0.881; Ncor=0.826; logoDP=5.919; NsEucl=0.946; NSW=0.957; rcor=45; rNcor=3; rlogoDP=16; rNsEucl=21; rNSW=35; rank_mean=24.000; match_rank=14 a 0 0 0 0 0 0 0 0 242 225 251 321 423 423 467 0 0 0 589 589 71 83 188 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 119 104 110 89 33 41 0 0 0 589 0 0 498 42 160 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 75 125 115 88 42 21 122 589 0 0 0 0 0 419 118 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 153 135 113 91 91 104 0 0 589 0 0 0 20 45 123 0 0 0 0 0 0

WRKY40.DAP_M0812_AthalianaCistrome_rc_shift9 (WRKY40.DAP:M0812:AthalianaCistrome_rc) 0.912 0.855 2.685 0.957 0.972 25 2 91 2 9 25.800 16
; dyads_test_vs_ctrl_m1 versus WRKY40.DAP_M0812_AthalianaCistrome_rc (WRKY40.DAP:M0812:AthalianaCistrome_rc); m=16/151; ncol2=15; w=15; offset=1; strand=R; shift=9; score= 25.8; ---------raaaAAGTCAAmrwh----- ; cor=0.912; Ncor=0.855; logoDP=2.685; NsEucl=0.957; NSW=0.972; rcor=25; rNcor=2; rlogoDP=91; rNsEucl=2; rNSW=9; rank_mean=25.800; match_rank=16 a 0 0 0 0 0 0 0 0 0 190 249 315 399 433 475 0 0 1 600 594 161 171 165 166 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 98 82 129 97 40 0 0 3 599 0 0 279 77 125 173 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 163 131 90 37 19 125 600 0 0 0 0 89 291 136 69 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 149 138 66 67 108 0 0 597 0 0 6 71 61 174 192 0 0 0 0 0

WRKY7_MA1313.1_JASPAR_rc_shift10 (WRKY7:MA1313.1:JASPAR_rc) 0.914 0.799 0.562 0.944 0.957 23 4 136 26 36 45.000 34
; dyads_test_vs_ctrl_m1 versus WRKY7_MA1313.1_JASPAR_rc (WRKY7:MA1313.1:JASPAR_rc); m=34/151; ncol2=14; w=14; offset=2; strand=R; shift=10; score= 45; ----------aaAAAGTCAACgmy----- ; cor=0.914; Ncor=0.799; logoDP=0.562; NsEucl=0.944; NSW=0.957; rcor=23; rNcor=4; rlogoDP=136; rNsEucl=26; rNSW=36; rank_mean=45.000; match_rank=34 a 0 0 0 0 0 0 0 0 0 0 269 382 539 579 578 1 0 1 594 594 39 30 178 135 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 118 81 4 0 0 0 7 593 0 0 552 55 179 160 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 78 70 25 3 13 593 0 0 0 0 0 395 116 79 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 129 61 26 12 3 0 587 0 0 0 3 114 121 220 0 0 0 0 0

Matrix name	cor	Ncor	logoDP	NsEucl	NSW	rcor	rNcor	rlogoDP	rNsEucl	rNSW	rank_mean	match_rank	Aligned matrices
dyads_test_vs_ctrl_m1_shift8 (dyads_test_vs_ctrl_m1)													; dyads_test_vs_ctrl_m1; m=0 (reference); ncol1=16; shift=8; ncol=29; --------wwgaAAAGTCAAmtww----- ; Alignment reference a 0 0 0 0 0 0 0 0 144 144 95 271 393 383 401 18 24 18 313 307 127 106 153 145 0 0 0 0 0 c 0 0 0 0 0 0 0 0 84 68 40 64 21 9 8 11 15 392 39 20 183 54 81 79 0 0 0 0 0 g 0 0 0 0 0 0 0 0 84 72 220 40 8 11 6 377 7 5 29 39 54 78 88 65 0 0 0 0 0 t 0 0 0 0 0 0 0 0 119 147 76 56 9 28 16 25 385 16 50 65 67 193 109 142 0 0 0 0 0
WRKY8.DAP_M0792_AthalianaCistrome_shift9 (WRKY8.DAP:M0792:AthalianaCistrome)	0.918	0.861	7.346	0.951	0.963	20	1	5	14	20	12.000	3	; dyads_test_vs_ctrl_m1 versus WRKY8.DAP_M0792_AthalianaCistrome (WRKY8.DAP:M0792:AthalianaCistrome); m=3/151; ncol2=15; w=15; offset=1; strand=D; shift=9; score= 12; ---------raaAAAGTCAACgaw----- ; cor=0.918; Ncor=0.861; logoDP=7.346; NsEucl=0.951; NSW=0.963; rcor=20; rNcor=1; rlogoDP=5; rNsEucl=14; rNSW=20; rank_mean=12.000; match_rank=3 a 0 0 0 0 0 0 0 0 0 186 275 363 528 566 575 0 0 0 600 600 58 87 191 176 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 104 98 79 8 0 0 0 0 600 0 0 527 72 146 132 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 173 108 90 37 7 24 600 0 0 0 0 0 376 117 63 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 137 119 68 27 27 1 0 600 0 0 0 15 65 146 229 0 0 0 0 0
WRKY43.ampDAP_M0828_AthalianaCistrome_shift8 (WRKY43.ampDAP:M0828:AthalianaCistrome)	0.881	0.826	5.919	0.946	0.957	45	3	16	21	35	24.000	14	; dyads_test_vs_ctrl_m1 versus WRKY43.ampDAP_M0828_AthalianaCistrome (WRKY43.ampDAP:M0828:AthalianaCistrome); m=14/151; ncol2=15; w=15; offset=0; strand=D; shift=8; score= 24; --------waaaAAAGTCAACGm------ ; cor=0.881; Ncor=0.826; logoDP=5.919; NsEucl=0.946; NSW=0.957; rcor=45; rNcor=3; rlogoDP=16; rNsEucl=21; rNSW=35; rank_mean=24.000; match_rank=14 a 0 0 0 0 0 0 0 0 242 225 251 321 423 423 467 0 0 0 589 589 71 83 188 0 0 0 0 0 0 c 0 0 0 0 0 0 0 0 119 104 110 89 33 41 0 0 0 589 0 0 498 42 160 0 0 0 0 0 0 g 0 0 0 0 0 0 0 0 75 125 115 88 42 21 122 589 0 0 0 0 0 419 118 0 0 0 0 0 0 t 0 0 0 0 0 0 0 0 153 135 113 91 91 104 0 0 589 0 0 0 20 45 123 0 0 0 0 0 0
WRKY40.DAP_M0812_AthalianaCistrome_rc_shift9 (WRKY40.DAP:M0812:AthalianaCistrome_rc)	0.912	0.855	2.685	0.957	0.972	25	2	91	2	9	25.800	16	; dyads_test_vs_ctrl_m1 versus WRKY40.DAP_M0812_AthalianaCistrome_rc (WRKY40.DAP:M0812:AthalianaCistrome_rc); m=16/151; ncol2=15; w=15; offset=1; strand=R; shift=9; score= 25.8; ---------raaaAAGTCAAmrwh----- ; cor=0.912; Ncor=0.855; logoDP=2.685; NsEucl=0.957; NSW=0.972; rcor=25; rNcor=2; rlogoDP=91; rNsEucl=2; rNSW=9; rank_mean=25.800; match_rank=16 a 0 0 0 0 0 0 0 0 0 190 249 315 399 433 475 0 0 1 600 594 161 171 165 166 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 98 82 129 97 40 0 0 3 599 0 0 279 77 125 173 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 163 131 90 37 19 125 600 0 0 0 0 89 291 136 69 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 149 138 66 67 108 0 0 597 0 0 6 71 61 174 192 0 0 0 0 0
WRKY7_MA1313.1_JASPAR_rc_shift10 (WRKY7:MA1313.1:JASPAR_rc)	0.914	0.799	0.562	0.944	0.957	23	4	136	26	36	45.000	34	; dyads_test_vs_ctrl_m1 versus WRKY7_MA1313.1_JASPAR_rc (WRKY7:MA1313.1:JASPAR_rc); m=34/151; ncol2=14; w=14; offset=2; strand=R; shift=10; score= 45; ----------aaAAAGTCAACgmy----- ; cor=0.914; Ncor=0.799; logoDP=0.562; NsEucl=0.944; NSW=0.957; rcor=23; rNcor=4; rlogoDP=136; rNsEucl=26; rNSW=36; rank_mean=45.000; match_rank=34 a 0 0 0 0 0 0 0 0 0 0 269 382 539 579 578 1 0 1 594 594 39 30 178 135 0 0 0 0 0 c 0 0 0 0 0 0 0 0 0 0 118 81 4 0 0 0 7 593 0 0 552 55 179 160 0 0 0 0 0 g 0 0 0 0 0 0 0 0 0 0 78 70 25 3 13 593 0 0 0 0 0 395 116 79 0 0 0 0 0 t 0 0 0 0 0 0 0 0 0 0 129 61 26 12 3 0 587 0 0 0 3 114 121 220 0 0 0 0 0